Bioconductor Opencyto gating

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gating opencyto gating

7.5 years ago justinyi10 ▴ 10

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opencyto gating

7.5 years ago justinyi10 ▴ 10

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opencyto gating

7.5 years ago justinyi10 ▴ 10

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opencyto gating gating bioconductor

7.5 years ago justinyi10 ▴ 10

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opencyto gating

7.5 years ago justinyi10 ▴ 10

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opencyto gating

7.5 years ago justinyi10 ▴ 10

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opencyto gating bioconductor

7.5 years ago justinyi10 ▴ 10

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data.table opencyto gating csv files R

7.6 years ago Rivka • 0

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flowcore opencyto gating flowset

updated 7.9 years ago by Jiang, Mike ★ 1.3k • written 7.9 years ago by jordan.xanthopoulos • 0

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opencyto bioconductor opencyto gating

updated 8.0 years ago by Jiang, Mike ★ 1.3k • written 8.0 years ago by Rivka • 0

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opencyto gating opencyto flowcore flowworkspace

updated 8.7 years ago by Jiang, Mike ★ 1.3k • written 8.7 years ago by anara92 • 0

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opencyto gating flowcore flow cytometry

updated 8.7 years ago by Jiang, Mike ★ 1.3k • written 8.7 years ago by Ulrik Stervbo ▴ 30

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opencyto gating flowworkspace

updated 8.7 years ago by Jiang, Mike ★ 1.3k • written 8.7 years ago by Ulrik Stervbo ▴ 30

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opencyto gating

8.7 years ago Ulrik Stervbo ▴ 30

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flowclust opencyto opencyto gating

updated 9.1 years ago by Greg Finak ▴ 240 • written 9.2 years ago by Viktor Thiel • 0

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opencyto gating

updated 9.2 years ago by Jiang, Mike ★ 1.3k • written 9.2 years ago by veronikag • 0

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opencyto opencyto gating FlowJo

updated 10.0 years ago by Greg Finak ▴ 150 • written 10.0 years ago by juancamilos ▴ 10

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openCyto gating

10.3 years ago thomas.mohr ▴ 20

18 results • Page 1 of 1

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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

I edited the previous post. I meant to remove the estimateGLMRobustDisp line in the second snipper : ```` DGE_list_object <- estimateGLMR…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

Sorry, I had forgotten estimateGLMDisp() produces weights as well as NB dispersions. The weights from estimatGLMRobustDisp() were intended …

Answer: Mean variance curve troubleshoot filtering by Gordon Smyth 52k

You could use `filterByExpr()`, as recommended by Law et al (2018) and in the limma and edgeR case studies. However, the main problem wi…

Comment: How do I fix an odd voom plot in a combined dataset? by Gordon Smyth 52k

You will get NA coefficients from `~Group+Batch` because the Group factor is completely confounded with the batch factor.

Comment: How do I fix an odd voom plot in a combined dataset? by 1sunmic2 • 0

Thanks for responding! I did change the code slightly: dge1 <- DGEList(counts = combined_data_counts) keep <- rowSums(cpm(dge1)…

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Answer: How do I fix an odd voom plot in a combined dataset?

Comment: How do I fix an odd voom plot in a combined dataset?

C: How does edgeR cpm function calculate log(CPM) values?

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